FOXREG

Contents:

  • AUCell & SCENIC Workflow
  • Python Example: Running the Hypergeometric Test
  • foxreg
    • foxreg package
FOXREG
  • foxreg
  • View page source

foxreg

  • foxreg package
    • Submodules
    • foxreg.core module
      • ComparisonTree
        • ComparisonTree.__init__()
        • ComparisonTree.analyze_factors()
        • ComparisonTree.calc_global_dictonary()
        • ComparisonTree.compareLayers()
        • ComparisonTree.compute_tau_and_kdtree()
        • ComparisonTree.construct_3D_embedding()
        • ComparisonTree.construct_tree()
        • ComparisonTree.create_global_tree()
        • ComparisonTree.initDict()
        • ComparisonTree.init_order()
        • ComparisonTree.map_labels_to_tau()
        • ComparisonTree.nmf_transform()
        • ComparisonTree.plotRSS_NMF()
        • ComparisonTree.plot_3dEmbedding()
        • ComparisonTree.return_the_tau_pval()
        • ComparisonTree.sort_and_print_labels()
    • foxreg.diagnostics module
      • calculate_metrics()
      • calculate_r2_and_coefficients()
      • check_r2_consistency()
      • process_data_for_labels()
    • Module contents
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